public class Fingerprint extends TreeMap<HaplotypeBlock,HaplotypeProbabilities>
AbstractMap.SimpleEntry<K,V>, AbstractMap.SimpleImmutableEntry<K,V>| Constructor and Description |
|---|
Fingerprint(String sample,
File source,
String info) |
| Modifier and Type | Method and Description |
|---|---|
void |
add(HaplotypeProbabilities h) |
void |
filterSuspectSites()
Attempts to filter out haplotypes that may have suspect genotyping by removing haplotypes that reach
a minimum confidence score yet have a significant fraction of observations from a third or fourth allele.
|
String |
getInfo() |
String |
getPrintableId() |
String |
getSample() |
File |
getSource() |
void |
merge(Fingerprint other)
Merges the likelihoods from the supplied Fingerprint into the likelihoods for this fingerprint.
|
ceilingEntry, ceilingKey, clear, clone, comparator, containsKey, containsValue, descendingKeySet, descendingMap, entrySet, firstEntry, firstKey, floorEntry, floorKey, forEach, get, headMap, headMap, higherEntry, higherKey, keySet, lastEntry, lastKey, lowerEntry, lowerKey, navigableKeySet, pollFirstEntry, pollLastEntry, put, putAll, remove, replace, replace, replaceAll, size, subMap, subMap, tailMap, tailMap, valuesequals, hashCode, isEmpty, toStringfinalize, getClass, notify, notifyAll, wait, wait, waitcompute, computeIfAbsent, computeIfPresent, equals, getOrDefault, hashCode, isEmpty, merge, putIfAbsent, removepublic String getSample()
public File getSource()
public String getInfo()
public String getPrintableId()
public void add(HaplotypeProbabilities h)
public void merge(Fingerprint other)
public void filterSuspectSites()