glfEntry Struct Reference
Collaboration diagram for glfEntry:
Public Member Functions | |
| glfEntry & | operator= (glfEntry &rhs) |
Public Attributes | |
| unsigned char | refBase:4 |
| "XACMGRSVTWYHKDBN"[ref_base] gives the reference base | |
| unsigned char | recordType:4 |
| unsigned int | offset |
| offset of this record from the previous one, in bases | |
| unsigned | depth:24 |
| log10 minimum likelihood * 10 and the number of mapped reads | |
| unsigned | minLLK:8 |
| unsigned char | mapQuality |
| root mean squared maximum mapping quality for overlapping reads | |
| union { | |
| unsigned char lk [10] | |
| log10 likelihood ratio * 10 for genotypes AA, AC, AG, AT, CC, CG, CT, GG, GT, TT | |
| glfIndel indel | |
| }; | |
Detailed Description
Definition at line 42 of file glfHandler.h.
The documentation for this struct was generated from the following files:
- general/glfHandler.h
- general/glfHandler.cpp
