| Interface | Description |
|---|---|
| JmolNode | |
| LoggerInterface |
Interface used for the logging mechanism.
|
| Class | Description |
|---|---|
| ArrayUtil | |
| Base64 | |
| BinaryDocument | |
| BitSetUtil | |
| BoxInfo | |
| CifDataReader | |
| ColorEncoder | |
| CommandHistory |
Implements a queue for a bash-like command history.
|
| CompoundDocument | |
| ContactPair | |
| DCT | |
| DefaultLogger |
Default implementation of the logger.
|
| Dimension | |
| Eigen |
Eigenvalues and eigenvectors of a real (n x n) symmetric matrix.
|
| Elements | |
| Escape | |
| FastBitSet | |
| Huffman | |
| Int2IntHash | |
| Int2IntHash.Entry | |
| JmolEdge | |
| JmolMolecule |
an independent class utilizing only org.jmol.api.JmolNode, not org.jmol.modelset.Atom
for use in finding molecules in models and SMILES strings
|
| JpegEncoder | |
| JpegInfo | |
| KfDocument | |
| LimitedLineReader | |
| Logger |
Logger mechanism.
|
| Measure | |
| MeshSurface | |
| OutputStringBuffer | |
| Parser | |
| Point3fi |
the Point3fi class allows storage of critical information involving
an atom, picked bond, or measurement point, including:
xyz position
screen position
screen radius (-1 for a simple point)
index (for atoms or for an associated bond that has be picked)
associated modelIndex (for measurement points)
|
| Quadric | |
| Quaternion | |
| Rectangle | |
| SimpleUnitCell |
general-purpose simple unit cell for calculations
and as a super-class of unitcell, which is only part of Symmetry
allows one-dimensional (polymer) and two-dimensional (slab)
periodicity
|
| SlowBitSet | |
| SurfaceFileTyper | |
| TempArray | |
| TextFormat | |
| TriangleData | |
| XmlReader | |
| XmlUtil | |
| ZipUtil |
| Enum | Description |
|---|---|
| JmolEdge.EnumBondOrder |