org.jmol.util

Class BinaryDocument

java.lang.Object

org.jmol.util.BinaryDocument

Direct Known Subclasses:

CompoundDocument

public class BinaryDocument
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	isBigEndian
protected boolean	isRandom
(package private) long	nBytes
(package private) java.io.OutputStream	os
protected java.io.DataInputStream	stream

Constructor Summary

Constructors

Constructor and Description
BinaryDocument()
BinaryDocument(java.io.BufferedInputStream bis)

Method Summary

Methods

Modifier and Type	Method and Description
void	close()
long	getPosition()
private int	ioRead(byte[] b, int off, int len)
private byte	ioReadByte()
private double	ioReadDouble()
private float	ioReadFloat()
private int	ioReadInt()
private long	ioReadLong()
private short	ioReadShort()
byte	readByte()
void	readByteArray(byte[] b)
int	readByteArray(byte[] b, int off, int len)
double	readDouble()
float	readFloat()
int	readInt()
private int	readLEInt()
private long	readLELong()
long	readLong()
short	readShort()
java.lang.String	readString(int nChar)
int	readUnsignedShort()
void	seek(long offset)
void	setIsBigEndian(boolean TF)
void	setOutputStream(java.io.OutputStream os, Viewer viewer, double privateKey)
void	setRandom(boolean TF)
void	setStream(java.io.BufferedInputStream bis, boolean isBigEndian)
void	setStream(java.io.DataInputStream stream)
static int	swapBytes(int n)
static short	swapBytes(short n)
void	writeBytes(byte[] b)
void	writeBytes(byte[] b, int off, int n)
void	writeInt(int i)
void	writeLong(long b)
void	writeShort(short i)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

stream

protected java.io.DataInputStream stream

isRandom

protected boolean isRandom

isBigEndian

protected boolean isBigEndian

nBytes

long nBytes

os

java.io.OutputStream os

Constructor Detail

BinaryDocument

public BinaryDocument()

BinaryDocument

public BinaryDocument(java.io.BufferedInputStream bis)

Method Detail

close

public void close()

setStream

public void setStream(java.io.BufferedInputStream bis,
             boolean isBigEndian)

setIsBigEndian

public void setIsBigEndian(boolean TF)

setStream

public void setStream(java.io.DataInputStream stream)

setRandom

public void setRandom(boolean TF)

readByte

public byte readByte()
              throws java.lang.Exception

Throws:

java.lang.Exception

ioReadByte

private byte ioReadByte()
                 throws java.lang.Exception

Throws:

java.lang.Exception

readByteArray

public void readByteArray(byte[] b)
                   throws java.lang.Exception

Throws:

java.lang.Exception

readByteArray

public int readByteArray(byte[] b,
                int off,
                int len)
                  throws java.lang.Exception

Throws:

java.lang.Exception

ioRead

private int ioRead(byte[] b,
         int off,
         int len)
            throws java.lang.Exception

Throws:

java.lang.Exception

writeBytes

public void writeBytes(byte[] b)
                throws java.lang.Exception

Throws:

java.lang.Exception

writeBytes

public void writeBytes(byte[] b,
              int off,
              int n)
                throws java.lang.Exception

Throws:

java.lang.Exception

readString

public java.lang.String readString(int nChar)
                            throws java.lang.Exception

Throws:

java.lang.Exception

readShort

public short readShort()
                throws java.lang.Exception

Throws:

java.lang.Exception

ioReadShort

private short ioReadShort()
                   throws java.lang.Exception

Throws:

java.lang.Exception

writeShort

public void writeShort(short i)
                throws java.lang.Exception

Throws:

java.lang.Exception

readInt

public int readInt()
            throws java.lang.Exception

Throws:

java.lang.Exception

ioReadInt

private int ioReadInt()
               throws java.lang.Exception

Throws:

java.lang.Exception

writeInt

public void writeInt(int i)
              throws java.lang.Exception

Throws:

java.lang.Exception

swapBytes

public static int swapBytes(int n)

swapBytes

public static short swapBytes(short n)

readUnsignedShort

public int readUnsignedShort()
                      throws java.lang.Exception

Throws:

java.lang.Exception

readLong

public long readLong()
              throws java.lang.Exception

Throws:

java.lang.Exception

ioReadLong

private long ioReadLong()
                 throws java.lang.Exception

Throws:

java.lang.Exception

writeLong

public void writeLong(long b)
               throws java.lang.Exception

Throws:

java.lang.Exception

readFloat

public float readFloat()
                throws java.lang.Exception

Throws:

java.lang.Exception

ioReadFloat

private float ioReadFloat()
                   throws java.lang.Exception

Throws:

java.lang.Exception

readDouble

public double readDouble()
                  throws java.lang.Exception

Throws:

java.lang.Exception

ioReadDouble

private double ioReadDouble()
                     throws java.lang.Exception

Throws:

java.lang.Exception

readLEInt

private int readLEInt()
               throws java.lang.Exception

Throws:

java.lang.Exception

readLELong

private long readLELong()
                 throws java.lang.Exception

Throws:

java.lang.Exception

seek

public void seek(long offset)

getPosition

public long getPosition()

setOutputStream

public void setOutputStream(java.io.OutputStream os,
                   Viewer viewer,
                   double privateKey)