org.jmol.shapesurface

Class LcaoCartoon

java.lang.Object

org.jmol.shape.Shape

org.jmol.shape.MeshCollection

org.jmol.shapesurface.Isosurface

org.jmol.shapesurface.LcaoCartoon

All Implemented Interfaces:

MeshDataServer, VertexDataServer

public class LcaoCartoon
extends Isosurface

Field Summary

Fields

Modifier and Type	Field and Description
private java.lang.Object	cappingObject
private java.lang.String	fullCommand
(package private) boolean	isLonePair
private boolean	isMolecular
(package private) boolean	isRadical
private boolean	isTranslucent
private java.lang.Integer	lcaoColorNeg
private java.lang.Integer	lcaoColorPos
private java.lang.String	lcaoID
private java.lang.Float	lcaoScale
private int	myColorPt
private javax.vecmath.Vector3f	rotationAxis
private java.lang.Object	slabbingObject
private java.util.BitSet	thisSet
private java.lang.String	thisType
private float	translucentLevel

Fields inherited from class org.jmol.shapesurface.Isosurface

allowMesh, iHaveBitSets, jvxlData, keyXy, sg, thisMesh

Fields inherited from class org.jmol.shape.MeshCollection

bsDisplay, colix, color, connections, currentMesh, displayWithinDistance2, displayWithinPoints, explicitID, htObjects, isDisplayWithinNot, isFixed, linkedMesh, meshCount, meshes, modelIndex, myType, nUnnamed, pickedMesh, pickedModel, pickedVertex, PREVIOUS_MESH_ID, previousMeshID, title

Fields inherited from class org.jmol.shape.Shape

g3d, isBioShape, modelSet, myVisibilityFlag, RADIUS_MAX, shapeID, translucentAllowed, viewer, xmlProperties

Constructor Summary

Constructors

Constructor and Description
LcaoCartoon()

Method Summary

Methods

Modifier and Type	Method and Description
private void	createLcaoCartoon()
private void	createLcaoCartoon(int iAtom)
private void	deleteLcaoCartoon()
private void	deleteLcaoCartoon(int iAtom)
private java.lang.String	getID(java.lang.String id, int i)
java.lang.String	getShapeState()
void	initShape()
void	merge(Shape shape) called by ParallelProcessor at completion
private void	setLcaoOn(boolean TF)
private void	setLcaoOn(int iAtom, boolean TF)
void	setProperty(java.lang.String propertyName, java.lang.Object value, java.util.BitSet bs) may come from any source -- executed AFTER a shape's own setProperty method

Methods inherited from class org.jmol.shapesurface.Isosurface

addMeshInfo, addRequiredFile, addTriangleCheck, addVertexCopy, allocMesh, calculateGeodesicSurface, checkObjectClicked, checkObjectHovered, clearSg, discardTempData, fillMeshData, getCapSlabInfo, getCmd, getPlane, getPolygonColorData, getProperty, getProperty, getShapeDetail, getSurfacePointIndexAndFraction, getValue, invalidateTriangles, newSg, notifySurfaceGenerationCompleted, notifySurfaceMappingCompleted, setOutputStream, setScriptInfo, slabPolygons

Methods inherited from class org.jmol.shape.MeshCollection

checkExplicit, clean, deleteMesh, deleteMesh, getIndexFromName, getMesh, getPickedPoint, setStatusPicked, setVisibilityFlags

Methods inherited from class org.jmol.shape.Shape

appendCmd, checkBoundsMinMax, checkObjectDragged, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColorCommand, getColorCommand, getFontCommand, getShapeCommands, getShapeCommands, getSize, getSize, getTranslucentLabel, getViewer, initializeShape, initModelSet, setColix, setColix, setColix, setModelClickability, setModelSet, setShapeProperty, setShapeSize, setSize, setSize, setStateInfo, setStateInfo, wasClicked

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

thisType

private java.lang.String thisType

myColorPt

private int myColorPt

lcaoID

private java.lang.String lcaoID

thisSet

private java.util.BitSet thisSet

isMolecular

private boolean isMolecular

rotationAxis

private javax.vecmath.Vector3f rotationAxis

lcaoScale

private java.lang.Float lcaoScale

isTranslucent

private boolean isTranslucent

translucentLevel

private float translucentLevel

lcaoColorPos

private java.lang.Integer lcaoColorPos

lcaoColorNeg

private java.lang.Integer lcaoColorNeg

isLonePair

boolean isLonePair

isRadical

boolean isRadical

cappingObject

private java.lang.Object cappingObject

slabbingObject

private java.lang.Object slabbingObject

fullCommand

private java.lang.String fullCommand

Constructor Detail

LcaoCartoon

public LcaoCartoon()

Method Detail

initShape

public void initShape()

Overrides:

initShape in class Isosurface

setProperty

public void setProperty(java.lang.String propertyName,
               java.lang.Object value,
               java.util.BitSet bs)

Description copied from class: Shape

may come from any source -- executed AFTER a shape's own setProperty method

Overrides:

setProperty in class Isosurface

setLcaoOn

private void setLcaoOn(boolean TF)

setLcaoOn

private void setLcaoOn(int iAtom,
             boolean TF)

deleteLcaoCartoon

private void deleteLcaoCartoon()

deleteLcaoCartoon

private void deleteLcaoCartoon(int iAtom)

createLcaoCartoon

private void createLcaoCartoon()

createLcaoCartoon

private void createLcaoCartoon(int iAtom)

getID

private java.lang.String getID(java.lang.String id,
                     int i)

getShapeState

public java.lang.String getShapeState()

Overrides:

getShapeState in class Isosurface

merge

public void merge(Shape shape)

Description copied from class: MeshCollection

called by ParallelProcessor at completion

Overrides:

merge in class Isosurface